WormBase Tree Display for Variation: WBVar00219301
expand all nodes | collapse all nodes | view schema
| WBVar00219301 | Name | Public_name | WBVar00219301 | ||
|---|---|---|---|---|---|
| Other_name | pas31077 | ||||
| cewivar00086952 | |||||
| CE21481:p.Ala237= | |||||
| Y25C1A.13.1:c.711C>T | |||||
| HGVSg | CHROMOSOME_II:g.3109676G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y25C1A | |
| Flanking_sequences | agcgcgcttgcctcactccagaatacatttattttacacgagatttacatagaacctgactaattttgatgaaatttttgaggaaatacattaaaaaacgggaaaaaatcaataatttcaaacatcctcataggttgccttcttcttattcatcaccgccatcgcactgctcaacagatccgtcgacaggagctggctcatattccacgtcttgataaagttcagcgaatcgtcggtcgagtgctcgcgggcgtagttcaacgtttccttggttccctgcacggcgatcgggctcttttc | gcgatacgggcggccatatcgatcgaattttcgagaagtgactgacgatcgtcgtagattctcgagatgagcccgaagcggagagcctcgtcggcgccgaagtcacgggcggtgaatgcgacgtcacgcgtccaactgtcgtttccgacgaccttctggatccggttgagggtgccgatgtcggcggcaagaccaacgtcgacttcctggaagattttttaggtttttgggaaaaattggatggaaaatcgatttttggcgacttgtacagcgttaaattggttttcaacttgtttgcac | |||
| Mapping_target | Y25C1A | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021296 | |||
| Transcript | Y25C1A.13.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y25C1A.13.1:c.711C>T | ||||
| HGVSp | CE21481:p.Ala237= | ||||
| cDNA_position | 736 | ||||
| CDS_position | 711 | ||||
| Protein_position | 237 | ||||
| Exon_number | 5/6 | ||||
| Codon_change | gcC/gcT | ||||
| Amino_acid_change | A | ||||
| Method | WGS_Pasadena_Quinlan |
