WormBase Tree Display for Variation: WBVar00216702
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WBVar00216702 | Name | Public_name | WBVar00216702 | ||
---|---|---|---|---|---|
Other_name | pas28478 | ||||
cewivar00115695 | |||||
F09A5.4d.1:c.777+71G>A | |||||
F09A5.4b.2:c.858+71G>A | |||||
F09A5.4c.1:c.885+71G>A | |||||
F09A5.4b.1:c.858+71G>A | |||||
F09A5.4g.1:c.600+71G>A | |||||
F09A5.4e.1:c.807+71G>A | |||||
F09A5.4a.1:c.735+71G>A | |||||
HGVSg | CHROMOSOME_X:g.13154107C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F09A5 | |
Flanking_sequences | atacaacattcaattcaaaaaattgcattaggtttttttttcaaattcacatcgcaattgttacaaaaaaaaactgactaagaaaactaagctaagaacttcaataccctctgctttagtttttttcttactggcaaaggctacaaacagacgaggtaatatacgataattatatataattaggaacactgatgggtgtggtttgacgactgtctggtcactgaacattcttttttttacaaattcaatacaatttgctgtggtttttcactaaaaaaacattttttacacaagacgtta | atgtcaatgacgtttcgcattggttacgcatgtgatttacgtgacgaaactaatcaagctcaaaacaaacctccgtcacacattcgtcaacttgctcttgatctttggcatcgagcaggctgaatgtccttcccaactctgcaatatgcgcaaacacaattgcacattgggggcgaagttgcagtgcgccgagcacgtcccaatgtttcagatacatgtggcccatacagtgaaataagtggctgagcattttcttcaccgccggctcaaagttaccgttgaatttgttgcctggaaaaa | |||
Mapping_target | F09A5 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00008601 | |||
Transcript | F09A5.4c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4c.1:c.885+71G>A | ||||
Intron_number | 6/7 | ||||
F09A5.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4b.1:c.858+71G>A | ||||
Intron_number | 5/6 | ||||
F09A5.4b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4b.2:c.858+71G>A | ||||
Intron_number | 5/6 | ||||
F09A5.4g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4g.1:c.600+71G>A | ||||
Intron_number | 3/3 | ||||
F09A5.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4a.1:c.735+71G>A | ||||
Intron_number | 5/6 | ||||
F09A5.4d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4d.1:c.777+71G>A | ||||
Intron_number | 4/4 | ||||
F09A5.4e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F09A5.4e.1:c.807+71G>A | ||||
Intron_number | 5/6 | ||||
Method | WGS_Pasadena_Quinlan |