WormBase Tree Display for Variation: WBVar00216501
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| WBVar00216501 | Name | Public_name | WBVar00216501 | ||
|---|---|---|---|---|---|
| Other_name | pas28277 | ||||
| haw145251 | |||||
| cewivar00023719 | |||||
| D2045.9.1:c.*126A>G | |||||
| D2045.9.3:c.*126A>G | |||||
| D2045.9.2:c.*126A>G | |||||
| D2045.7.2:c.-28+24A>G | |||||
| HGVSg | CHROMOSOME_III:g.10479570A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | D2045 | |
| Flanking_sequences | acatacctattgttttcaggattggtcgttacacttcgagcccctcgacgttgaagctttcaccctttacccattagtcgtattccctcaaaaatacacaaatgagcctggttacgtgtccgacactgaagattccgtcattgtgacaccgaaacctaaaagcgaggaattgtgattttatttaaattttgtttaaattctatttatttcttgttattcatcatttttgtgtgggtgtctttctctttcccatccaaaaatgttcggttttctcgaagtgggttttattcagttttaaaa | tgcgcgcatttgtaccgtgcgggtctcgcaacgaaaactttaacaagtagaaaatattcggtattttcacgaattattgataattattccatcgatttttaaaatgaaaattcgatattttccaaggacctacttaaacaatgcgtgcgcctttaaacttctgttgttaactacttaccattttgtttattgaataaaattccttgaattttacaaaattttcaatttaactttcacttaattgtccaccacgctcaactcaaaatacctctcaacatttttcaaggaaaatctcaaaaa | |||
| Mapping_target | D2045 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (20) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00565116 | |||
| WBVar01267870 | |||||
| WBVar01332903 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00008424 | |||
| WBGene00008426 | |||||
| Transcript | D2045.7.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | D2045.7.2:c.-28+24A>G | ||||
| Intron_number | 1/8 | ||||
| D2045.9.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | D2045.9.1:c.*126A>G | ||||
| cDNA_position | 1774 | ||||
| Exon_number | 9/9 | ||||
| D2045.9.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | D2045.9.3:c.*126A>G | ||||
| cDNA_position | 2474 | ||||
| Exon_number | 8/8 | ||||
| D2045.9.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | D2045.9.2:c.*126A>G | ||||
| cDNA_position | 1749 | ||||
| Exon_number | 8/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
