WormBase Tree Display for Variation: WBVar00216175
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| WBVar00216175 | Name | Public_name | WBVar00216175 | ||
|---|---|---|---|---|---|
| Other_name | pas27951 | ||||
| haw120068 | |||||
| cewivar00075134 | |||||
| CE20264:p.Thr1077= | |||||
| Y47H9C.4c.1:c.3049+1316G>C | |||||
| Y47H9C.4d.1:c.-1118G>C | |||||
| Y47H9C.4b.1:c.3124+107G>C | |||||
| Y47H9C.4a.1:c.3231G>C | |||||
| HGVSg | CHROMOSOME_I:g.11854295C>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47H9C | |
| Flanking_sequences | tacagtttttcaggctttttctcgtaactttttgctgattttttttaaattatagaatttttcagttttttacagtaaaaccgttcgcttcgagacccaaatgtccctaaaattttcttaaaattttaagaccaggagttcagaaatttcagctaaaaatggcacaagaaacgtgcaaatttggtgggcggaattggggggtaattacatgcaataaaatgggacggggggagaacacaatttttgtccaactttttccaaaaaatttcaaaaatgctatgaaccattgtgattcgatgt | gttactgcatgtgctggagatatcgagttctcgtgtggttcatcgaattcttcttcgtcatgctcttctaatagaggtcgacgtgattgttcagatgaatttaaacctctacgagaagctgaagctgaagctgatgatgatgatccttctccagctacttcgtccagggaggcgtagtcgtctgggaaaatttaaattttttagaagattttttttttcagaaaataaaaatttttcgatttcggctttttttgaaaaaatcggtctttttcgaaaaaattagaaaacattagattttgt | |||
| Mapping_target | Y47H9C | ||||
| Type_of_mutation | Substitution | C | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (105) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01350171 | |||
| WBVar01433372 | |||||
| WBVar01424630 | |||||
| WBVar00539933 | |||||
| WBVar01285702 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000415 | |||
| Transcript | Y47H9C.4a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y47H9C.4a.1:c.3231G>C | ||||
| HGVSp | CE20264:p.Thr1077= | ||||
| cDNA_position | 3237 | ||||
| CDS_position | 3231 | ||||
| Protein_position | 1077 | ||||
| Exon_number | 11/13 | ||||
| Codon_change | acG/acC | ||||
| Amino_acid_change | T | ||||
| Y47H9C.4d.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47H9C.4d.1:c.-1118G>C | ||||
| cDNA_position | 168 | ||||
| Exon_number | 1/4 | ||||
| Y47H9C.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47H9C.4c.1:c.3049+1316G>C | ||||
| Intron_number | 10/11 | ||||
| Y47H9C.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47H9C.4b.1:c.3124+107G>C | ||||
| Intron_number | 11/12 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
