WormBase Tree Display for Variation: WBVar00188261
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| WBVar00188261 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00188261 | |||
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_IV:g.4015498T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | W02C12 | |
| Flanking_sequences | aaaaagaaaagaagaagaatcgaat | gagtggagacatctagacgccgcag | |||
| Mapping_target | W02C12 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00571931 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00020930 | |||
| Transcript | W02C12.3e.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3e.1:c.*261A>T | ||||
| cDNA_position | 1581 | ||||
| Exon_number | 10/10 | ||||
| W02C12.3d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3d.1:c.*261A>T | ||||
| cDNA_position | 1656 | ||||
| Exon_number | 11/11 | ||||
| W02C12.3g.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3g.1:c.*509A>T | ||||
| cDNA_position | 1885 | ||||
| Exon_number | 11/11 | ||||
| W02C12.3c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3c.1:c.*261A>T | ||||
| cDNA_position | 1877 | ||||
| Exon_number | 13/13 | ||||
| W02C12.3h.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3h.2:c.*261A>T | ||||
| cDNA_position | 1450 | ||||
| Exon_number | 10/10 | ||||
| W02C12.3a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3a.1:c.*261A>T | ||||
| cDNA_position | 1819 | ||||
| Exon_number | 12/12 | ||||
| W02C12.3f.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3f.1:c.*261A>T | ||||
| cDNA_position | 1746 | ||||
| Exon_number | 11/11 | ||||
| W02C12.3a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3a.2:c.*261A>T | ||||
| cDNA_position | 1816 | ||||
| Exon_number | 12/12 | ||||
| W02C12.3b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3b.1:c.*261A>T | ||||
| cDNA_position | 1802 | ||||
| Exon_number | 12/12 | ||||
| W02C12.3d.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W02C12.3d.2:c.*261A>T | ||||
| cDNA_position | 1850 | ||||
| Exon_number | 12/12 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw55537 | ||||
| Method | WGS_Hawaiian_Waterston |
