WormBase Tree Display for Variation: WBVar00186577
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WBVar00186577 | Name | Public_name | WBVar00186577 | ||
---|---|---|---|---|---|
Other_name | haw53853 | ||||
cewivar00036260 | |||||
Y54G2A.36.4:c.-229G>A | |||||
Y54G2A.36.5:c.-275G>A | |||||
Y54G2A.36.1:c.-275G>A | |||||
Y54G2A.36.3:c.-275G>A | |||||
Y54G2A.36.2:c.-275G>A | |||||
HGVSg | CHROMOSOME_IV:g.2900918G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | ttttagccattttcaaggttctgga | aatcatctggtgaatcttccggcga | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (26) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021898 | |||
Transcript | Y54G2A.36.2 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.2:c.-275G>A | ||||
cDNA_position | 127 | ||||
Exon_number | 2/5 | ||||
Y54G2A.36.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.1:c.-275G>A | ||||
cDNA_position | 153 | ||||
Exon_number | 2/5 | ||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.5:c.-275G>A | ||||
cDNA_position | 2815 | ||||
Exon_number | 1/4 | ||||
Y54G2A.36.4 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.4:c.-229G>A | ||||
cDNA_position | 129 | ||||
Exon_number | 2/6 | ||||
Y54G2A.36.3 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.3:c.-275G>A | ||||
cDNA_position | 118 | ||||
Exon_number | 2/5 | ||||
Remark | [20081124 db] this Variation was previously named hw53853 | ||||
Method | WGS_Hawaiian_Waterston |