WormBase Tree Display for Variation: WBVar00178969
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| WBVar00178969 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00178969 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.10671882C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y39A1A | |
| Flanking_sequences | attgaatgactgccaccggaaagtg | cacaattcgcagctgctgacccgat | |||
| Mapping_target | Y39A1A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (139) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01448228 | |||
| WBVar01448227 | |||||
| WBVar01333247 | |||||
| WBVar00216635 | |||||
| WBVar01268230 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000566 | |||
| Transcript | Y39A1A.15e.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15e.3:c.464-966C>T | ||||
| Intron_number | 5/10 | ||||
| Y39A1A.15b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15b.2:c.698-966C>T | ||||
| Intron_number | 7/12 | ||||
| Y39A1A.15b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15b.1:c.698-966C>T | ||||
| Intron_number | 8/13 | ||||
| Y39A1A.15f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15f.1:c.71-966C>T | ||||
| Intron_number | 4/9 | ||||
| Y39A1A.15a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15a.1:c.1166-966C>T | ||||
| Intron_number | 6/11 | ||||
| Y39A1A.15e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15e.1:c.464-966C>T | ||||
| Intron_number | 7/12 | ||||
| Y39A1A.15c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15c.1:c.554-966C>T | ||||
| Intron_number | 5/10 | ||||
| Y39A1A.15e.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A1A.15e.2:c.464-966C>T | ||||
| Intron_number | 6/11 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw46245 | ||||
| Method | WGS_Hawaiian_Waterston |
