WormBase Tree Display for Variation: WBVar00175876
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| WBVar00175876 | Name | Public_name | WBVar00175876 | ||
|---|---|---|---|---|---|
| Other_name | pas41371 | ||||
| haw29126 | |||||
| haw133218 | |||||
| cewivar00095286 | |||||
| C05D12.3c.2:c.*1462G>T | |||||
| C05D12.3c.3:c.*213G>T | |||||
| C05D12.3c.1:c.*213G>T | |||||
| CE02972:p.Arg44= | |||||
| C05D12.4.1:c.132G>T | |||||
| HGVSg | CHROMOSOME_II:g.11432015G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C05D12 | |
| Flanking_sequences | ctcaaaaagatgaagccatcaagcg | gccaaattgctgaaacatgagctcg | |||
| Mapping_target | C05D12 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (162) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar00229595 | |||
| WBVar00553083 | |||||
| WBVar01311927 | |||||
| WBVar01439991 | |||||
| WBVar01376774 | |||||
| WBVar01244858 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007341 | |||
| WBGene00014666 | |||||
| Transcript | C05D12.4.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C05D12.4.1:c.132G>T | ||||
| HGVSp | CE02972:p.Arg44= | ||||
| cDNA_position | 132 | ||||
| CDS_position | 132 | ||||
| Protein_position | 44 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | cgG/cgT | ||||
| Amino_acid_change | R | ||||
| C05D12.3c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C05D12.3c.1:c.*213G>T | ||||
| cDNA_position | 3234 | ||||
| Exon_number | 18/18 | ||||
| C05D12.3c.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C05D12.3c.3:c.*213G>T | ||||
| cDNA_position | 3219 | ||||
| Exon_number | 17/18 | ||||
| C05D12.3c.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C05D12.3c.2:c.*1462G>T | ||||
| cDNA_position | 4482 | ||||
| Exon_number | 17/17 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw29126 | ||||
| Method | WGS_Hawaiian_Waterston |
