WormBase Tree Display for Variation: WBVar00162887
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| WBVar00162887 | Name | Public_name | WBVar00162887 | ||
|---|---|---|---|---|---|
| Other_name | haw16137 | ||||
| haw123656 | |||||
| cewivar00175470 | |||||
| Y43H11AL.1d.1:c.270-483C>T | |||||
| Y43H11AL.1a.2:c.1084-483C>T | |||||
| Y43H11AL.1a.1:c.1084-483C>T | |||||
| Y43H11AL.1a.4:c.1084-483C>T | |||||
| Y43H11AL.1b.1:c.1245-483C>T | |||||
| Y43H11AL.1c.1:c.1203-483C>T | |||||
| Y43H11AL.1a.3:c.1084-483C>T | |||||
| HGVSg | CHROMOSOME_II:g.224280G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43H11AL | |
| Flanking_sequences | gataattggaaatgtattctaactg | cctagctggacaactttagaaaaaa | |||
| Mapping_target | Y43H11AL | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01357561 | |||
| WBVar00543521 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021545 | |||
| Transcript | Y43H11AL.1a.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.3:c.1084-483C>T | ||||
| Intron_number | 7/10 | ||||
| Y43H11AL.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1c.1:c.1203-483C>T | ||||
| Intron_number | 6/8 | ||||
| Y43H11AL.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1d.1:c.270-483C>T | ||||
| Intron_number | 2/4 | ||||
| Y43H11AL.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1b.1:c.1245-483C>T | ||||
| Intron_number | 8/11 | ||||
| Y43H11AL.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.1:c.1084-483C>T | ||||
| Intron_number | 7/10 | ||||
| Y43H11AL.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.2:c.1084-483C>T | ||||
| Intron_number | 7/8 | ||||
| Y43H11AL.1a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.4:c.1084-483C>T | ||||
| Intron_number | 7/9 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw16137 | ||||
| Method | WGS_Hawaiian_Waterston |
