WormBase Tree Display for Variation: WBVar00151870
expand all nodes | collapse all nodes | view schema
WBVar00151870 | Name | Public_name | WBVar00151870 | ||
---|---|---|---|---|---|
Other_name | haw5120 | ||||
haw115998 | |||||
cewivar00072588 | |||||
Y54E10A.11.2:c.3664+35T>A | |||||
Y54E10A.11.1:c.3664+35T>A | |||||
HGVSg | CHROMOSOME_I:g.3179639A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
Flanking_sequences | attggaaattttgagcaaaagccgc | ttttttttttgaaattcaaattttc | |||
Mapping_target | Y54E10A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (40) | |||||
Laboratory | RW | ||||
QX | |||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
WBPerson1730 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar00535863 | |||
WBVar01421505 | |||||
WBVar01341989 | |||||
WBVar01430959 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021831 | |||
Transcript | Y54E10A.11.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E10A.11.1:c.3664+35T>A | ||||
Intron_number | 13/15 | ||||
Y54E10A.11.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E10A.11.2:c.3664+35T>A | ||||
Intron_number | 13/15 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00040707 | |||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw5120 | ||||
Method | WGS_Hawaiian_Waterston |