WormBase Tree Display for Variation: WBVar00146320
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| WBVar00146320 | Evidence | Paper_evidence | WBPaper00003027 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | gm40 | |||||
| Other_name | F55C7.7a.1:c.485G>A | ||||||
| F55C7.7i.2:c.485G>A | |||||||
| CE19465:p.Trp162Ter | |||||||
| CE19464:p.Trp162Ter | |||||||
| F55C7.7b.1:c.485G>A | |||||||
| F55C7.7i.1:c.485G>A | |||||||
| CE36937:p.Trp162Ter | |||||||
| HGVSg | CHROMOSOME_I:g.4028204C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | C09D1 | |||
| Flanking_sequences | ggcggaagctatccatatgatcatgatgaat | gcttgagctcaggttggatctcgagaaatgg | |||||
| Mapping_target | C09D1 | ||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003027 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00028755 | ||||||
| Laboratory | NG | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006805 | |||||
| Transcript | F55C7.7i.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F55C7.7i.1:c.485G>A | ||||||
| HGVSp | CE36937:p.Trp162Ter | ||||||
| cDNA_position | 485 | ||||||
| CDS_position | 485 | ||||||
| Protein_position | 162 | ||||||
| Exon_number | 4/26 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| F55C7.7b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F55C7.7b.1:c.485G>A | ||||||
| HGVSp | CE19465:p.Trp162Ter | ||||||
| cDNA_position | 485 | ||||||
| CDS_position | 485 | ||||||
| Protein_position | 162 | ||||||
| Exon_number | 4/21 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| F55C7.7a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F55C7.7a.1:c.485G>A | ||||||
| HGVSp | CE19464:p.Trp162Ter | ||||||
| cDNA_position | 597 | ||||||
| CDS_position | 485 | ||||||
| Protein_position | 162 | ||||||
| Exon_number | 5/34 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| F55C7.7i.2 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F55C7.7i.2:c.485G>A | ||||||
| HGVSp | CE36937:p.Trp162Ter | ||||||
| cDNA_position | 485 | ||||||
| CDS_position | 485 | ||||||
| Protein_position | 162 | ||||||
| Exon_number | 4/25 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| Isolation | Mutagen | EMS | |||||
| Genetics | Interpolated_map_position | I | -1.83998 | ||||
| Description | Phenotype_not_observed | WBPhenotype:0001652 | Paper_evidence | WBPaper00032446 | |||
| Curator_confirmed | WBPerson2021 | ||||||
| Reference | WBPaper00032446 | ||||||
| WBPaper00017706 | |||||||
| Method | Substitution_allele |
