WormBase Tree Display for Variation: WBVar00144581
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WBVar00144581 | Evidence | Paper_evidence | WBPaper00005045 | ||
---|---|---|---|---|---|
Name | Public_name | e2121 | |||
Other_name | CE27480:p.Gln552Ter | ||||
CE50219:p.Gln8Ter | |||||
Y54E10A.4d.1:c.22C>T | |||||
Y54E10A.4b.1:c.1654C>T | |||||
Y54E10A.4c.1:c.847C>T | |||||
CE50301:p.Gln283Ter | |||||
CE27479:p.Gln338Ter | |||||
Y54E10A.4a.2:c.1012C>T | |||||
Y54E10A.4a.1:c.1012C>T | |||||
HGVSg | CHROMOSOME_I:g.3216815C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
Flanking_sequences | caggtccgaatgaatccagaagccaaactc | aacagttcctacgcatgaaacgtaccaacg | |||
Mapping_target | Y54E10A | ||||
Type_of_mutation | Substitution | c | t | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004543 | ||||
Laboratory | CB | ||||
Status | Live | ||||
Affects | Gene | WBGene00001481 | |||
Transcript | Y54E10A.4d.1 | VEP_consequence | stop_gained | ||
VEP_impact | HIGH | ||||
HGVSc | Y54E10A.4d.1:c.22C>T | ||||
HGVSp | CE50219:p.Gln8Ter | ||||
cDNA_position | 22 | ||||
CDS_position | 22 | ||||
Protein_position | 8 | ||||
Exon_number | 1/1 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Y54E10A.4a.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | Y54E10A.4a.1:c.1012C>T | ||||
HGVSp | CE27479:p.Gln338Ter | ||||
cDNA_position | 1666 | ||||
CDS_position | 1012 | ||||
Protein_position | 338 | ||||
Exon_number | 10/11 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Y54E10A.4c.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | Y54E10A.4c.1:c.847C>T | ||||
HGVSp | CE50301:p.Gln283Ter | ||||
cDNA_position | 847 | ||||
CDS_position | 847 | ||||
Protein_position | 283 | ||||
Exon_number | 4/4 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Y54E10A.4b.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | Y54E10A.4b.1:c.1654C>T | ||||
HGVSp | CE27480:p.Gln552Ter | ||||
cDNA_position | 1666 | ||||
CDS_position | 1654 | ||||
Protein_position | 552 | ||||
Exon_number | 10/10 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Y54E10A.4a.2 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | Y54E10A.4a.2:c.1012C>T | ||||
HGVSp | CE27479:p.Gln338Ter | ||||
cDNA_position | 1140 | ||||
CDS_position | 1012 | ||||
Protein_position | 338 | ||||
Exon_number | 6/7 | ||||
Codon_change | Caa/Taa | ||||
Amino_acid_change | Q/* | ||||
Interactor | WBInteraction000524766 | ||||
WBInteraction000524773 | |||||
WBInteraction000524789 | |||||
Isolation | Mutagen | EMS | |||
Genetics | Interpolated_map_position | I | -4.46985 | ||
Mapping_data | In_multi_point | 2040 | |||
2784 | |||||
3030 | |||||
3276 | |||||
In_pos_neg_data | 3183 | ||||
8068 | |||||
Reference | WBPaper00022404 | ||||
WBPaper00015489 | |||||
Method | Substitution_allele |