WormBase Tree Display for Variation: WBVar00144032
expand all nodes | collapse all nodes | view schema
WBVar00144032 | Name | Public_name | e1482 | |||||
---|---|---|---|---|---|---|---|---|
Sequence_details | SeqStatus | Pending_curation | ||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004344 | |||||||
WBStrain00030738 | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00004860 | ||||||
Interactor (87) | ||||||||
Genetics | Mapping_data | In_2_point | 1534 | |||||
3709 | ||||||||
In_multi_point | 843 | |||||||
1360 | ||||||||
1719 | ||||||||
In_pos_neg_data | 3710 | |||||||
3711 | ||||||||
3712 | ||||||||
3713 | ||||||||
3714 | ||||||||
Description | Phenotype | WBPhenotype:0000324 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | short adult and late larvae. e1482/Df similar | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Ease_of_scoring | ES2_Difficult_to_score | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_not_observed | WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
EQ_annotations (2) | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | |||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001857 | Paper_evidence | WBPaper00031023 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Abrogation of the TGF-beta pathway, as represented by sma-6(e1482), did not affect pgp-5 gene expression induction upon (Pseudomonas aeruginosa strain) PA14 infection. The fold increase in pgp-5 mRNA in sma-6(e1482), as determined by qRT-PCR, were not statistically different from wild type (Supplemental Results). | Paper_evidence | WBPaper00031023 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Reference | WBPaper00026334 | |||||||
WBPaper00001328 | ||||||||
WBPaper00015420 | ||||||||
WBPaper00031023 | ||||||||
WBPaper00061175 | ||||||||
Remark | Created by WBPerson51134 from the NN_VFP_triage_pipeline | |||||||
Variation stub/paper connection generated from the May 2021 NN VFP dataset. | ||||||||
Method | Allele |