WormBase Tree Display for Variation: WBVar00143892
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WBVar00143892 | Evidence | Paper_evidence | WBPaper00004282 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e1287 | |||||||
Other_name (4) | |||||||||
HGVSg | CHROMOSOME_IV:g.135550G>A | ||||||||
Sequence_details | SMap | S_parent | Sequence | F29C4 | |||||
Flanking_sequences | ccagaaaatcatgggaggcgaaattcgact | gtatataagattcaagccaaaacctggaga | |||||||
Mapping_target | F29C4 | ||||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00004282 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00000897 | |||||||
Transcript | F29C4.1b.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F29C4.1b.1:c.605G>A | ||||||||
HGVSp | CE31492:p.Trp202Ter | ||||||||
cDNA_position | 605 | ||||||||
CDS_position | 605 | ||||||||
Protein_position | 202 | ||||||||
Exon_number | 5/9 | ||||||||
Codon_change | tGg/tAg | ||||||||
Amino_acid_change | W/* | ||||||||
F29C4.1a.1 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F29C4.1a.1:c.605G>A | ||||||||
HGVSp | CE17719:p.Trp202Ter | ||||||||
cDNA_position | 640 | ||||||||
CDS_position | 605 | ||||||||
Protein_position | 202 | ||||||||
Exon_number | 6/11 | ||||||||
Codon_change | tGg/tAg | ||||||||
Amino_acid_change | W/* | ||||||||
Interactor (2) | |||||||||
Genetics | Interpolated_map_position | IV | -26.9035 | ||||||
Mapping_data | In_2_point | 408 | |||||||
Description | Phenotype | WBPhenotype:0000012 | Paper_evidence | WBPaper00028386 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals formed less than 20% dauer at 16C. | Paper_evidence | WBPaper00028386 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00028386 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 16 | Paper_evidence | WBPaper00028386 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | unc-4(e120) | Paper_evidence | WBPaper00028386 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001837 | Paper_evidence | WBPaper00050676 | |||||||
Curator_confirmed | WBPerson20840 | ||||||||
Remark | does not respond to dietary restriction | Paper_evidence | WBPaper00050676 | ||||||
Curator_confirmed | WBPerson20840 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00050676 | ||||
Curator_confirmed | WBPerson20840 | ||||||||
Phenotype_not_observed | WBPhenotype:0002535 | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | FITC uptake is normal. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00000932 | ||||||||
WBPaper00028386 | |||||||||
WBPaper00050676 | |||||||||
Method | Substitution_allele |