WormBase Tree Display for Variation: WBVar00143269
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WBVar00143269 | Evidence | Paper_evidence (2) | ||||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | e518 | ||||||
Other_name | F45G2.5.1:c.167C>T | |||||||
CE16048:p.Ser56Leu | ||||||||
HGVSg | CHROMOSOME_III:g.13429087G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | F45G2 | ||||
Flanking_sequences | ctgagaatacaattcgaaagaaaagtgcat | aagagaatgggtttgtttggcaactaatga | ||||||
Mapping_target | F45G2 | |||||||
Type_of_mutation | Substitution | c | t | Paper_evidence (2) | ||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004175 | |||||||
WBStrain00029049 | ||||||||
WBStrain00034353 | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000255 | ||||||
Transcript | F45G2.5.1 | VEP_consequence | missense_variant | |||||
VEP_impact | MODERATE | |||||||
HGVSc | F45G2.5.1:c.167C>T | |||||||
HGVSp | CE16048:p.Ser56Leu | |||||||
cDNA_position | 222 | |||||||
CDS_position | 167 | |||||||
Protein_position | 56 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | tCa/tTa | |||||||
Amino_acid_change | S/L | |||||||
Interactor | WBInteraction000537317 | |||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00026992 | ||||
Genetics | Interpolated_map_position | III | 21.2139 | |||||
Mapping_data | In_2_point | 82 | ||||||
483 | ||||||||
In_multi_point | 65 | |||||||
375 | ||||||||
1658 | ||||||||
1661 | ||||||||
3055 | ||||||||
3113 | ||||||||
3114 | ||||||||
3264 | ||||||||
3265 | ||||||||
3266 | ||||||||
In_pos_neg_data | 355 | |||||||
3245 | ||||||||
8141 | ||||||||
Description | Phenotype (7) | |||||||
Phenotype_not_observed | WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
EQ_annotations (2) | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | |||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001412 | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Table 1 | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0001426 | Paper_evidence | WBPaper00004883 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Genotype | arIs37 | Paper_evidence | WBPaper00004883 | ||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00001328 | |||||||
WBPaper00000031 | ||||||||
WBPaper00004883 | ||||||||
WBPaper00005747 | ||||||||
Method | Substitution_allele |