WormBase Tree Display for Variation: WBVar00133313

WBVar00133313 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00133313
    Other_name: cbs68835
    HGVSg: chrI:g.5858419C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.NA_034
    Flanking_sequences: aagcgtataggatagctttgtgtaaaactagagtgaaattcgataacagc tggagacaaaactcccattattttttgtatgtcaaacatttattttaaaa
    Mapping_target: cb25.NA_034
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 416 336 65 46 43 37 31 26
        AGCT AluI 536 345 119
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 500 500
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 500 500
        AATT Sse9I, TasI, Tsp509I, TspEI 222 215 172 88 65 46 43 31 26 21 21 16 13 10 6 5
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 416 336 102 46 43 31 26
        AGCT AluI 502 345 119 34
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 1000
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 222 215 172 88 86 46 43 31 26 21 16 13 10 6 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00042004
    Transcript: CBG23731.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG23731.1:c.33+348C>T
        Intron_number: 2/5
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP