WormBase Tree Display for Variation: WBVar00131247

WBVar00131247 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00131247
    Other_name: cbs66768
    HGVSg: chrI:g.2868127T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4321
    Flanking_sequences: aacaagttttttaatgtatttttgatgctcaaaatttcacaaatgatgtg tttgagttgtttattagttttttgtcgaaaagttttccaattgtagaaca
    Mapping_target: cb25.fpc4321
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 405 297 240 58
        RGCY CviJI, CviTI 405 297 129 61 58 50
        TCGA EsaBC3I, TaqI, TthHB8I 242 232 168 120 103 89 31 10 5
        AAGCTT HindIII 1000
      Polymorphic_strain_digest: AGCT AluI 297 240 235 170 58
        RGCY CviJI, CviTI 297 235 170 129 61 58 50
        TCGA EsaBC3I, TaqI, TthHB8I 352 242 168 103 89 31 10 5
        AAGCTT HindIII 530 470
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00040828
    Transcript: CBG22220.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG22220.1:c.447+309T>C
        Intron_number: 5/12
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP