WormBase Tree Display for Variation: WBVar00130960
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| WBVar00130960 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00130960 | ||||
| Other_name | cbs66481 | |||||
| HGVSg | chrI:g.1958032C>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4321 | ||
| Flanking_sequences | tgctgagccgccaagaccagttccagctccagccaatcctccagggagat | ggctccacttctacaagctgctcagcctccatcggtggctcctcaagttc | ||||
| Mapping_target | cb25.fpc4321 | |||||
| Type_of_mutation | Substitution | C | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 800 200 | ||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 103 102 97 79 69 63 59 56 48 42 33 33 31 30 28 24 23 22 19 19 15 5 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 800 189 11 | ||||
| CCANNNNNNTGG | BstXI | 1000 | ||||
| CAC | HindI | 87 82 78 72 71 63 63 54 47 45 41 36 33 30 27 22 22 18 18 15 15 13 12 11 6 6 6 4 3 | ||||
| Polymorphic_strain_digest | GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 460 304 200 36 | |||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 161 103 97 79 69 63 56 48 42 33 33 31 30 28 24 23 22 19 19 15 5 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 460 304 189 36 11 | ||||
| CCANNNNNNTGG | BstXI | 503 497 | ||||
| CAC | HindI | 88 82 78 72 71 63 63 54 47 45 41 36 33 29 27 22 22 18 18 15 15 13 12 11 6 6 6 4 3 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040690 | ||||
| Transcript | CBG22049.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG22049.1:c.1145C>G | |||||
| HGVSp | CBP12079.1:p.Ser382Trp | |||||
| cDNA_position | 1179 | |||||
| CDS_position | 1145 | |||||
| Protein_position | 382 | |||||
| Exon_number | 4/12 | |||||
| Codon_change | tCg/tGg | |||||
| Amino_acid_change | S/W | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
