WormBase Tree Display for Variation: WBVar00130750
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| WBVar00130750 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00130750 | ||||
| Other_name | cbs66271 | |||||
| HGVSg | chrI:g.6924463T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4292a | ||
| Flanking_sequences | tgcagagtgtaaaatagacctagattgaaaactttgcattcagcaaagtt | ttgaaatcccaagtttttccgctgtttgccgatttctgaataacacctat | ||||
| Mapping_target | cb25.fpc4292a | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | AGGCCT | AatI, Eco147I, PceI, SseBI, StuI | 1000 | ||
| AGCT | AluI | 294 200 192 152 88 42 32 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 691 281 28 | ||||
| RGCY | CviJI, CviTI | 195 194 192 152 88 87 42 17 15 13 5 | ||||
| TGCA | CviRI, HpyCH4V | 515 250 125 76 34 | ||||
| WGGCCW | HaeI | 719 281 | ||||
| TCNGA | Hpy188I | 537 196 96 91 62 11 7 | ||||
| GTNAC | MaeIII | 574 426 | ||||
| Polymorphic_strain_digest | AGGCCT | AatI, Eco147I, PceI, SseBI, StuI | 533 467 | |||
| AGCT | AluI | 294 192 187 152 88 42 32 13 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 533 281 158 28 | ||||
| RGCY | CviJI, CviTI | 194 192 152 147 88 87 42 40 17 15 13 8 5 | ||||
| TGCA | CviRI, HpyCH4V | 462 250 125 76 53 34 | ||||
| WGGCCW | HaeI | 533 281 186 | ||||
| TCNGA | Hpy188I | 599 196 96 91 11 7 | ||||
| GTNAC | MaeIII | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040592 | ||||
| Transcript | CBG21923a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21923a.1:c.801-240A>T | |||||
| Intron_number | 4/11 | |||||
| CBG21923b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21923b.1:c.801-240A>T | |||||
| Intron_number | 4/10 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
