WormBase Tree Display for Variation: WBVar00127820
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| WBVar00127820 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00127820 | ||||
| Other_name | cbs63341 | |||||
| HGVSg | chrI:g.15205355G>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4140 | ||
| Flanking_sequences | agagagtgagagagggatagagagagacttggaaaaacgagaaaagaaga | agagagagagcggtttcttttccaaccccaaaaaacgggatcggaagtga | ||||
| Mapping_target | cb25.fpc4140 | |||||
| Type_of_mutation | Substitution | G | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTMKAC | AccI, FblI, XmiI | 614 386 | ||
| GGATCC | BamHI | 1000 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 534 318 148 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 621 220 159 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 435 205 128 124 108 | ||||
| GTYRAC | HincII, HindII | 734 105 88 73 | ||||
| CAC | HindI | 130 103 92 86 75 67 54 48 46 41 33 33 29 28 21 18 17 13 12 10 8 7 7 5 4 4 3 2 2 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 294 182 156 118 98 78 74 | ||||
| GTNNAC | Hpy8I | 495 194 105 88 73 45 | ||||
| GTCGAC | SalI | 1000 | ||||
| Polymorphic_strain_digest | GTMKAC | AccI, FblI, XmiI | 433 386 181 | |||
| GGATCC | BamHI | 606 394 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 534 318 79 69 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 388 233 220 159 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 435 329 128 108 | ||||
| GTYRAC | HincII, HindII | 375 359 105 88 73 | ||||
| CAC | HindI | 124 103 86 75 67 54 50 46 42 41 33 33 29 28 27 21 18 17 14 13 13 12 10 8 7 7 5 4 4 3 2 2 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 294 254 182 118 78 74 | ||||
| GTNNAC | Hpy8I | 314 194 181 105 88 73 45 | ||||
| GTCGAC | SalI | 566 434 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00038974 | ||||
| Transcript | CBG19814a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19814a.1:c.133-3355C>G | |||||
| Intron_number | 2/8 | |||||
| CBG19814b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19814b.1:c.103-3355C>G | |||||
| Intron_number | 2/8 | |||||
| CBG19814c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19814c.1:c.103-3355C>G | |||||
| Intron_number | 2/8 | |||||
| CBG19814d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19814d.1:c.133-3355C>G | |||||
| Intron_number | 2/8 | |||||
| CBG19814e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19814e.1:c.706-3355C>G | |||||
| Intron_number | 7/13 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
