WormBase Tree Display for Variation: WBVar00125692
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| WBVar00125692 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00125692 | ||||
| Other_name | cbs61213 | |||||
| HGVSg | chrIV:g.11563857A>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4069d | ||
| Flanking_sequences | atggacgatcgtgcagaaagagctccgctttatcgtggtttctttgtgtc | ccaaacacagatgcagtacttccaatggtccatatggaacctacaatgct | ||||
| Mapping_target | cb25.fpc4069d | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GACGTC | AatII, ZraI | 1000 | ||
| GTYRAC | HincII, HindII | 1000 | ||||
| CAC | HindI | 166 156 133 130 118 54 50 44 42 26 24 15 13 11 10 6 2 | ||||
| GTNNAC | Hpy8I | 1000 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 970 30 | ||||
| GTNAC | MaeIII | 443 401 156 | ||||
| GTSAC | NmuCI, Tsp45I | 1000 | ||||
| Polymorphic_strain_digest | GACGTC | AatII, ZraI | 822 178 | |||
| GTYRAC | HincII, HindII | 821 179 | ||||
| CAC | HindI | 166 156 133 130 118 54 50 44 42 26 24 15 13 11 7 6 3 2 | ||||
| GTNNAC | Hpy8I | 821 179 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 825 145 30 | ||||
| GTNAC | MaeIII | 443 401 103 53 | ||||
| GTSAC | NmuCI, Tsp45I | 504 496 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00037269 | ||||
| Transcript | CBG17711a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG17711a.1:c.1320T>A | |||||
| HGVSp | CBP44671.1:p.Ser440%3D | |||||
| cDNA_position | 1409 | |||||
| CDS_position | 1320 | |||||
| Protein_position | 440 | |||||
| Exon_number | 6/13 | |||||
| Codon_change | tcT/tcA | |||||
| Amino_acid_change | S | |||||
| CBG17711b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG17711b.1:c.1320T>A | |||||
| HGVSp | CBP47072.1:p.Ser440%3D | |||||
| cDNA_position | 1320 | |||||
| CDS_position | 1320 | |||||
| Protein_position | 440 | |||||
| Exon_number | 5/11 | |||||
| Codon_change | tcT/tcA | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
