WormBase Tree Display for Variation: WBVar00125639

WBVar00125639 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00125639
    Other_name: cbs61160
    HGVSg: chrIV:g.11884345C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4069d
    Flanking_sequences: ttttcgtattgtaagcaaatgcaaaattttgatagggaaaaaatattgac gaaaaataacaaaaatcgagaaaaataactctgtaaacaaaagtattttt
    Mapping_target: cb25.fpc4069d
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 789 100 58 36 17
        TCGA EsaBC3I, TaqI, TthHB8I 483 244 193 70 10
        CAC HindI 200 196 98 84 56 48 36 36 34 27 26 22 22 20 19 18 17 13 10 9 5 4
        CGWCG Hpy99I 448 287 244 21
        GCWGC TseI 786 100 58 36 20
      Polymorphic_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 789 136 58 17
        TCGA EsaBC3I, TaqI, TthHB8I 797 193 10
        CAC HindI 196 126 95 84 74 56 48 36 36 34 27 26 22 22 20 19 18 17 13 10 9 5 4 3
        CGWCG Hpy99I 692 287 21
        GCWGC TseI 786 136 58 20
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037198
    Transcript: CBG17627b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG17627b.1:c.287-181G>T
        Intron_number: 3/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP