WormBase Tree Display for Variation: WBVar00121710

WBVar00121710 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121710
    Other_name: cbs57231
    HGVSg: chrX:g.11116781C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: ctgaaaatggccaaaatggcaaaaaaatcaactgaaaaatacggttttgt tatcttattgagcagtactgtacattacctgacaccacttgtccatgagg
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 1000
        TTTAAA AhaIII, DraI 587 413
        TGGCCA BalI, MlsI, MluNI, MscI, Msp20I 540 460
        GCCNNNNNGGC BglI 537 463
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 540 460
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 537 463
        YGGCCR CfrI, EaeI 538 462
        RGCY CviJI, CviTI 192 187 173 161 153 48 29 20 19 8 5 5
        WGGCCW HaeI 540 460
        CAC HindI 181 177 132 93 74 67 65 47 40 34 32 25 14 12 4 3 0
      Polymorphic_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 613 387
        TTTAAA AhaIII, DraI 587 382 31
        TGGCCA BalI, MlsI, MluNI, MscI, Msp20I 1000
        GCCNNNNNGGC BglI 1000
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 613 387
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 1000
        YGGCCR CfrI, EaeI 1000
        RGCY CviJI, CviTI 212 187 173 161 153 48 29 19 8 5 5
        WGGCCW HaeI 613 387
        CAC HindI 181 177 132 127 74 67 65 47 40 32 25 14 12 4 3 0
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035154
    Transcript: CBG14750.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14750.1:c.169+29C>A
        Intron_number: 2/4
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP