WormBase Tree Display for Variation: WBVar00121684

WBVar00121684 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121684
    Other_name: cbs57205
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: ctaatacagatgtttttctcgttcgagcaattttcgcaatcaagcttgga ttttcaattttaaaagttctagaaattctagcgatcggaatggtaccaag
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGTACC Acc65I, Asp718I, KpnI 547 453
        GGYRCC AccB1I, BanI, BshNI, BspT107I, HgiCI 547 323 130
        GTAC AfaI, Csp6I, RsaI 373 323 222 64 18
        GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        TTTAAA AhaIII, DraI 314 221 216 174 75
        AGCT AluI 506 463 31
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 409 309 277 5
        RGCY CviJI, CviTI 276 189 139 123 90 84 64 31 4
        AAGCTT HindIII 504 496
        TTAA MseI, Tru1I, Tru9I 313 116 109 108 105 90 75 52 32
      Polymorphic_strain_digest: GGTACC Acc65I, Asp718I, KpnI 1000
        GGYRCC AccB1I, BanI, BshNI, BspT107I, HgiCI 677 323
        GTAC AfaI, Csp6I, RsaI 373 323 286 18
        GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 546 454
        TTTAAA AhaIII, DraI 314 221 216 175 74
        AGCT AluI 969 31
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 309 277 237 172 5
        RGCY CviJI, CviTI 276 262 189 90 84 64 31 4
        AAGCTT HindIII 1000
        TTAA MseI, Tru1I, Tru9I 313 116 109 108 105 90 74 53 32
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP