WormBase Tree Display for Variation: WBVar00121668
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WBVar00121668 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00121668 | ||||
Other_name | cbs57189 | |||||
cb57189 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrX:g.10952961C>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | attcagcatcatcaatagaagcgac | cgaagaggggttctagcaaacatct | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 505 261 234 | ||
CAC | HindI | 108 100 96 94 93 86 82 48 44 32 30 27 26 22 21 17 15 12 12 12 8 7 4 2 2 | ||||
CAATTG | MfeI, MunI | 797 203 | ||||
Polymorphic_strain_digest | CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 739 261 | |||
CAC | HindI | 108 100 94 93 86 82 66 48 44 32 30 30 27 26 22 21 17 15 12 12 12 8 7 4 2 2 | ||||
CAATTG | MfeI, MunI | 631 203 166 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00035131 | ||||
Transcript | CBG14719.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | CBG14719.1:c.900G>A | |||||
HGVSp | CBP09723.1:p.Arg300%3D | |||||
cDNA_position | 945 | |||||
CDS_position | 900 | |||||
Protein_position | 300 | |||||
Exon_number | 5/7 | |||||
Codon_change | cgC/cgA | |||||
Amino_acid_change | R | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |