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WormBase Tree Display for Variation: WBVar00121668

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Name Class

WBVar00121668EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00121668
Other_namecbs57189
cb57189Paper_evidenceWBPaper00055507
HGVSgchrX:g.10952961C>T
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesattcagcatcatcaatagaagcgaccgaagaggggttctagcaaacatct
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI505 261 234
CACHindI108 100 96 94 93 86 82 48 44 32 30 27 26 22 21 17 15 12 12 12 8 7 4 2 2
CAATTGMfeI, MunI797 203
Polymorphic_strain_digestCCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI739 261
CACHindI108 100 94 93 86 82 66 48 44 32 30 30 27 26 22 21 17 15 12 12 12 8 7 4 2 2
CAATTGMfeI, MunI631 203 166
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00035131
TranscriptCBG14719.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScCBG14719.1:c.900G>A
HGVSpCBP09723.1:p.Arg300%3D
cDNA_position945
CDS_position900
Protein_position300
Exon_number5/7
Codon_changecgC/cgA
Amino_acid_changeR
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP