WormBase Tree Display for Variation: WBVar00121667

WBVar00121667 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121667
    Other_name: cbs57188
    HGVSg: chrX:g.10947101C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: atgtcttcagtttggtcaataattatttcggatgtgtgttcccggcaaaa ggtacgtgacaaagcaaacagatcaagagatcagctctcaatatagctat
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 688 312
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 695 305
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 688 261 51
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 452 276 112 79 73 8
        CCNNGG BsaJI, BseDI, BssECI, SecI 647 304 49
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 495 309 196
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 1000
        TCNNGA Hpy178III, Hpy188III 255 243 218 143 52 45 44
        GTNAC MaeIII 489 278 167 39 27
        GTSAC NmuCI, Tsp45I 489 484 27
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 1000
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 739 261
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 460 139 137 112 79 73
        CCNNGG BsaJI, BseDI, BssECI, SecI 647 353
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 691 309
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 672 328
        TCNNGA Hpy178III, Hpy188III 398 243 218 52 45 44
        GTNAC MaeIII 656 278 39 27
        GTSAC NmuCI, Tsp45I 973 27
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035129
    Transcript: CBG14717.1 VEP_consequence: missense_variant,splice_region_variant
        VEP_impact: MODERATE
        HGVSc: CBG14717.1:c.238G>A
        HGVSp: CBP49496.1:p.Gly80Arg
        cDNA_position: 238
        CDS_position: 238
        Protein_position: 80
        Exon_number: 2/8
        Codon_change: Gga/Aga
        Amino_acid_change: G/R
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP