WormBase Tree Display for Variation: WBVar00121538

WBVar00121538 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00121538
    Other_name: cbs57059
      cb57059 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.10409177A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: aagttccttcttgaatattcttgaa tttcaaaaaacattaccaaatttgg
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GACNNNNNNGTC AasI, DrdI, DseDI 1000
        RAATTY AcsI, ApoI, XapI 273 167 147 143 142 66 27 20 15
        WCCGGW BetI, BsaWI 614 386
        CCGG BsiSI, HapII, HpaII, MspI 251 236 177 152 92 27 27 23 5 5 5
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 935 65
        RGCY CviJI, CviTI 258 140 107 107 90 60 60 37 34 27 26 26 8 5 5 5 5
        CATATG FauNDI, NdeI 634 366
        TTAA MseI, Tru1I, Tru9I 355 318 146 124 37 20
        AATT Sse9I, TasI, Tsp509I, TspEI 273 142 133 105 97 66 28 27 27 22 20 20 19 15 6
      Polymorphic_strain_digest: GACNNNNNNGTC AasI, DrdI, DseDI 536 464
        RAATTY AcsI, ApoI, XapI 273 167 162 147 143 66 27 15
        WCCGGW BetI, BsaWI 1000
        CCGG BsiSI, HapII, HpaII, MspI 251 236 177 152 115 27 27 5 5 5
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 505 430 65
        RGCY CviJI, CviTI 258 214 140 90 60 60 37 34 27 26 26 8 5 5 5 5
        CATATG FauNDI, NdeI 426 366 208
        TTAA MseI, Tru1I, Tru9I 355 295 146 124 37 23 20
        AATT Sse9I, TasI, Tsp509I, TspEI 273 162 133 105 97 66 28 27 27 22 20 19 15 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035044
    Transcript: CBG14604a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14604a.1:c.110-601T>G
        Intron_number: 3/8
      CBG14604b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14604b.1:c.110-601T>G
        Intron_number: 3/8
      CBG14604c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14604c.1:c.110-601T>G
        Intron_number: 3/8
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP