WormBase Tree Display for Variation: WBVar00121502
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| WBVar00121502 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00121502 | ||||
| Other_name | cbs57023 | |||||
| cb57023 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | ggagtagggctgaacaataatttagttcatagggcgacgaggggaggaggagtatttgacatgtgcatttaggttaggaaagtaggcggagccatttaaa | atttatagagaagaattagttgagcttttagcctacgatgtcgaatggagaacatattgaggatagagagacgatcagaataggaactgtactggatattacaacgcactttcagctcaattatctgaatttctattggaggtaacaaaa | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 483 142 134 128 78 21 14 | ||
| CTAG | BfaI, MaeI, XspI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 383 249 174 126 68 | ||||
| TGCA | CviRI, HpyCH4V | 535 465 | ||||
| TCNGA | Hpy188I | 374 180 131 114 72 52 49 28 | ||||
| CGWCG | Hpy99I | 566 434 | ||||
| TTAA | MseI, Tru1I, Tru9I | 363 201 186 139 74 33 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 108 105 99 97 89 84 82 78 72 43 39 37 21 14 14 9 5 4 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 448 163 142 134 78 21 14 | |||
| CTAG | BfaI, MaeI, XspI | 583 417 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 632 174 126 68 | ||||
| TGCA | CviRI, HpyCH4V | 1000 | ||||
| TCNGA | Hpy188I | 374 229 131 114 72 52 28 | ||||
| CGWCG | Hpy99I | 1000 | ||||
| TTAA | MseI, Tru1I, Tru9I | 363 201 139 111 75 74 33 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 108 105 99 97 89 84 78 72 49 47 43 39 37 21 14 9 5 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
