WormBase Tree Display for Variation: WBVar00121486

WBVar00121486 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121486
    Other_name: cbs57007
    HGVSg: chrX:g.10064715A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: taaacggtattcaacacttctacttctcaacgcacgttttctggttttca aagagtgcatatgatccccctaacttctaaccaacatctcctaccaattt
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TGCA CviRI, HpyCH4V 335 275 134 93 80 55 28
        CAC HindI 133 113 100 74 68 65 56 55 54 45 29 26 24 18 18 18 15 15 15 14 13 12 11 7 2
        CAYNNNNRTG MslI, SmiMI 503 497
      Polymorphic_strain_digest: TGCA CviRI, HpyCH4V 335 275 227 80 55 28
        CAC HindI 137 133 100 74 66 65 56 55 54 45 29 26 18 18 18 15 15 15 14 13 12 11 7 2 2
        CAYNNNNRTG MslI, SmiMI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034995
    Transcript: CBG14531a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14531a.1:c.106-193T>A
        Intron_number: 3/12
      CBG14531b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14531b.1:c.106-193T>A
        Intron_number: 3/11
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP