WormBase Tree Display for Variation: WBVar00121485
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WBVar00121485 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00121485 | ||||
Other_name | cbs57006 | |||||
HGVSg | chrX:g.10064709A>C | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | gtattcaacacttctacttctcaacgcacgttttctggttttcataagag | gcatatgatccccctaacttctaaccaacatctcctaccaatttttttca | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | T | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TGCA | CviRI, HpyCH4V | 335 281 134 93 74 55 28 | ||
CAC | HindI | 127 113 100 80 68 65 56 55 54 45 29 26 24 18 18 18 15 15 15 14 13 12 11 7 2 | ||||
CAYNNNNRTG | MslI, SmiMI | 503 497 | ||||
Polymorphic_strain_digest | TGCA | CviRI, HpyCH4V | 335 281 227 74 55 28 | |||
CAC | HindI | 137 127 100 80 66 65 56 55 54 45 29 26 18 18 18 15 15 15 14 13 12 11 7 2 2 | ||||
CAYNNNNRTG | MslI, SmiMI | 1000 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00034995 | ||||
Transcript | CBG14531a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG14531a.1:c.106-187T>G | |||||
Intron_number | 3/12 | |||||
CBG14531b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG14531b.1:c.106-187T>G | |||||
Intron_number | 3/11 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |