WormBase Tree Display for Variation: WBVar00121464

WBVar00121464 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121464
    Other_name: cbs56985
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tttgtatccttgaccccagaaaaaagcaattcggcaaactcgagacacca gaaaaaacttcgaacaagaacaatcgcactaactttacgtttctttttgt
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 445 315 176 34 30
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 742 258
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 1000
        CAC HindI 112 107 86 78 59 48 47 46 44 43 37 35 34 33 33 30 29 29 27 8 7 6 5 5 5 4 3
        AATT Sse9I, TasI, Tsp509I, TspEI 445 279 176 36 34 30
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 445 250 176 65 34 30
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 500 258 242
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 500 500
        CAC HindI 112 107 86 78 59 48 47 46 44 43 37 35 34 33 33 32 30 29 27 8 7 6 5 5 5 4
        AATT Sse9I, TasI, Tsp509I, TspEI 445 250 176 36 34 30 29
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP