WormBase Tree Display for Variation: WBVar00121455
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| WBVar00121455 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00121455 | ||||
| Other_name | cbs56976 | |||||
| cb56976 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrX:g.9950543A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gctaagaatggcaagaagattagga | aactgagatcggactgggatttcct | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 628 193 174 5 | ||
| GKGCMC | Bme1580I, BseSI | 662 338 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 662 338 | ||||
| TGCA | CviRI, HpyCH4V | 403 245 184 135 33 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 543 361 96 | ||||
| Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 628 193 120 54 5 | |||
| GKGCMC | Bme1580I, BseSI | 1000 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
| TGCA | CviRI, HpyCH4V | 344 245 184 135 59 33 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 543 457 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034976 | ||||
| Transcript | CBG14509a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14509a.1:c.3545T>C | |||||
| HGVSp | CBP42676.1:p.Tyr1182Ser | |||||
| cDNA_position | 3570 | |||||
| CDS_position | 3545 | |||||
| Protein_position | 1182 | |||||
| Exon_number | 11/18 | |||||
| Codon_change | tAt/tCt | |||||
| Amino_acid_change | Y/S | |||||
| CBG14509b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14509b.1:c.3545T>C | |||||
| HGVSp | CBP40010.1:p.Tyr1182Ser | |||||
| cDNA_position | 3570 | |||||
| CDS_position | 3545 | |||||
| Protein_position | 1182 | |||||
| Exon_number | 11/18 | |||||
| Codon_change | tAt/tCt | |||||
| Amino_acid_change | Y/S | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
