WormBase Tree Display for Variation: WBVar00121438
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| WBVar00121438 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00121438 | ||||
| Other_name | cbs56959 | |||||
| HGVSg | chrX:g.9922935G>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | cgccatggctcaacaacaagcggtgcggcaacagcaaattcagcagaaag | gattctacagaaggatattgatgctcgtcgtgcggaacaggcacgtgtcg | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | C | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 714 286 | ||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 653 288 40 19 | ||||
| CAC | HindI | 165 120 77 67 62 58 56 51 43 42 36 30 27 26 23 19 16 11 11 10 8 8 8 6 6 4 4 4 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 465 454 81 | ||||
| CAYNNNNRTG | MslI, SmiMI | 656 344 | ||||
| AATATT | SspI | 763 237 | ||||
| Polymorphic_strain_digest | GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 481 286 233 | |||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 439 288 214 40 19 | ||||
| CAC | HindI | 165 120 77 67 62 56 53 51 43 42 36 30 27 26 23 19 16 11 11 10 8 8 8 6 6 5 4 4 4 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 465 416 81 38 | ||||
| CAYNNNNRTG | MslI, SmiMI | 421 344 235 | ||||
| AATATT | SspI | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034975 | ||||
| Transcript | CBG14505a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14505a.1:c.4331C>G | |||||
| HGVSp | CBP45764.1:p.Ala1444Gly | |||||
| cDNA_position | 4356 | |||||
| CDS_position | 4331 | |||||
| Protein_position | 1444 | |||||
| Exon_number | 11/20 | |||||
| Codon_change | gCg/gGg | |||||
| Amino_acid_change | A/G | |||||
| CBG14505b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14505b.1:c.4331C>G | |||||
| HGVSp | CBP43842.1:p.Ala1444Gly | |||||
| cDNA_position | 4356 | |||||
| CDS_position | 4331 | |||||
| Protein_position | 1444 | |||||
| Exon_number | 11/18 | |||||
| Codon_change | gCg/gGg | |||||
| Amino_acid_change | A/G | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
