WormBase Tree Display for Variation: WBVar00121407

WBVar00121407 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121407
    Other_name: cbs56928
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: cgagctttgcttttttaggtcaaacgccaagctaatcgtttaaatcggcg tcgaaatgggaggaggcggttacgtaagaaggttgaaaaatgagggtaag
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TCCGGA AccIII, BseAI, BsiMI, Bsp13I, BspEI, BspMII, Kpn2I, MroI 558 442
        CCGC AciI 519 481
        TGATCA BclI, BsiQI, FbaI, Ksp22I 1000
        WCCGGW BetI, BsaWI 558 442
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 503 497
        CCGG BsiSI, HapII, HpaII, MspI 557 443
        CGATCG BspCI, Ple19I, PvuI 500 500
        TTATAA PsiI 873 127
        CTYRAG SmlI 661 339
      Polymorphic_strain_digest: TCCGGA AccIII, BseAI, BsiMI, Bsp13I, BspEI, BspMII, Kpn2I, MroI 442 365 193
        CCGC AciI 500 481 19
        TGATCA BclI, BsiQI, FbaI, Ksp22I 872 128
        WCCGGW BetI, BsaWI 442 365 193
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 872 128
        CCGG BsiSI, HapII, HpaII, MspI 443 364 193
        CGATCG BspCI, Ple19I, PvuI 1000
        TTATAA PsiI 1000
        CTYRAG SmlI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP