WormBase Tree Display for Variation: WBVar00121401

WBVar00121401 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121401
    Other_name: cbs56922
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: acactttctttgacgaatttttgaaaattttttcagaactctccagaaat ggtccattttgctctttttgaagtggaactttatttaaatcacgcactga
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCANNNNNTGG AccB7I, PflBI, PflMI, Van91I 504 496
        CCNNGG BsaJI, BseDI, BssECI, SecI 443 396 161
        CCRYGG BstDSI, BtgI, DsaI 443 396 161
        TCGA EsaBC3I, TaqI, TthHB8I 262 166 161 119 113 61 54 54 10
        CAC HindI 208 204 94 91 75 73 53 45 37 31 18 17 13 13 12 8 4 2 2
        TCNGA Hpy188I 297 230 187 173 101 12
        AATT Sse9I, TasI, Tsp509I, TspEI 183 127 97 92 92 91 59 57 48 35 31 22 22 13 11 10 10
      Polymorphic_strain_digest: CCANNNNNTGG AccB7I, PflBI, PflMI, Van91I 1000
        CCNNGG BsaJI, BseDI, BssECI, SecI 557 443
        CCRYGG BstDSI, BtgI, DsaI 557 443
        TCGA EsaBC3I, TaqI, TthHB8I 166 161 136 126 119 113 61 54 54 10
        CAC HindI 208 204 94 91 90 75 53 45 37 31 18 13 13 12 8 4 2 2
        TCNGA Hpy188I 297 230 187 173 113
        AATT Sse9I, TasI, Tsp509I, TspEI 183 127 97 92 92 91 79 59 48 35 31 22 13 11 10 10
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP