Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00121390

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00121390EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00121390
Other_namecbs56911
cb56911Paper_evidenceWBPaper00055507
HGVSg
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesttttgttcatttttttgttttataaccccctaaaccacgcttaacttatt
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestAGCTAluI379 312 219 90
RGCYCviJI, CviTI312 290 219 90 73 16
CACHindI118 90 81 70 67 64 60 50 46 45 43 37 31 31 24 23 19 15 13 13 12 11 11 9 6 5 4 2
TCNNGAHpy178III, Hpy188III387 228 212 173
GTNNACHpy8I279 248 188 160 67 58
GTNACMaeIII516 354 71 46 13
Polymorphic_strain_digestAGCTAluI312 290 219 90 89
RGCYCviJI, CviTI312 219 201 90 89 73 16
CACHindI118 96 81 70 67 64 60 52 50 46 45 37 31 31 24 23 19 15 13 13 12 11 11 5 4 2
TCNNGAHpy178III, Hpy188III440 387 173
GTNNACHpy8I436 279 160 67 58
GTNACMaeIII516 354 117 13
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00034958
TranscriptCBG14482.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position6334
Exon_number10/10
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP