WormBase Tree Display for Variation: WBVar00121390
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WBVar00121390 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00121390 | ||||
Other_name | cbs56911 | |||||
cb56911 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | ||||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | ttttgttcatttttttgttttataa | ccccctaaaccacgcttaacttatt | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | A | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | AGCT | AluI | 379 312 219 90 | ||
RGCY | CviJI, CviTI | 312 290 219 90 73 16 | ||||
CAC | HindI | 118 90 81 70 67 64 60 50 46 45 43 37 31 31 24 23 19 15 13 13 12 11 11 9 6 5 4 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 387 228 212 173 | ||||
GTNNAC | Hpy8I | 279 248 188 160 67 58 | ||||
GTNAC | MaeIII | 516 354 71 46 13 | ||||
Polymorphic_strain_digest | AGCT | AluI | 312 290 219 90 89 | |||
RGCY | CviJI, CviTI | 312 219 201 90 89 73 16 | ||||
CAC | HindI | 118 96 81 70 67 64 60 52 50 46 45 37 31 31 24 23 19 15 13 13 12 11 11 5 4 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 440 387 173 | ||||
GTNNAC | Hpy8I | 436 279 160 67 58 | ||||
GTNAC | MaeIII | 516 354 117 13 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00034958 | ||||
Transcript | CBG14482.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | |||||
cDNA_position | 6334 | |||||
Exon_number | 10/10 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |