WormBase Tree Display for Variation: WBVar00121388

WBVar00121388 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121388
    Other_name: cbs56909
    HGVSg: chrX:g.9810452T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tgatataggatttcccaacttcaaagaaccaaaacattttgcagaaactc ctttcacagtctagctccttgtcccaatcctttcgtgggcgattaagacc
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 296 238 219 106 79 32 30
        RGCY CviJI, CviTI 219 207 120 88 79 79 73 32 30 27 19 16 11
        CAC HindI 93 90 81 62 60 58 57 57 45 43 42 37 32 31 31 29 19 19 18 16 13 12 12 11 11 9 6 6
        GTNNAC Hpy8I 416 213 188 138 45
        GTNAC MaeIII 516 261 147 71 5
      Polymorphic_strain_digest: AGCT AluI 290 238 219 106 79 32 30 6
        RGCY CviJI, CviTI 219 201 120 88 79 79 73 32 30 27 19 16 11 6
        CAC HindI 96 93 81 62 60 58 57 57 52 45 42 37 32 31 31 29 19 19 18 16 13 12 12 11 11 6
        GTNNAC Hpy8I 416 326 213 45
        GTNAC MaeIII 516 261 147 76
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034958
    Transcript: CBG14482.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: CBG14482.1:c.5995+2T>G
        Intron_number: 8/9
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP