WormBase Tree Display for Variation: WBVar00121384

WBVar00121384 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00121384
    Other_name: cbs56905
      cb56905 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.9809316G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: gccaggatcgtcttctgggtaagtt aattaaaattgacagttgcaatttg
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 469 268 161 79 23
        GCTAGC AsuNHI, BmtI, NheI 574 426
        CTAG BfaI, MaeI, XspI 575 366 59
        TCNGA Hpy188I 305 247 201 146 88 13
        GTNAC MaeIII 835 165
        TTAA MseI, Tru1I, Tru9I 503 433 64
        GTSAC NmuCI, Tsp45I 1000
      Polymorphic_strain_digest: CCGC AciI 469 291 161 79
        GCTAGC AsuNHI, BmtI, NheI 1000
        CTAG BfaI, MaeI, XspI 941 59
        TCNGA Hpy188I 256 247 201 146 88 49 13
        GTNAC MaeIII 659 176 165
        TTAA MseI, Tru1I, Tru9I 498 433 64 5
        GTSAC NmuCI, Tsp45I 824 176
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034958
    Transcript: CBG14482.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG14482.1:c.4946+8G>T
        Intron_number: 6/9
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP