WormBase Tree Display for Variation: WBVar00121371

WBVar00121371 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00121371
    Other_name: cbs56892
      cb56892 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: ttgagttagtcagaagtgtcagggt ttttgaaatggcattttggaaattt
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 331 171 140 123 70 57 49 19 16 16 8
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 776 224
        CAC HindI 186 130 122 86 69 50 46 33 30 30 27 26 26 22 21 21 14 11 10 10 8 8 6 2 2 2 2
        TTAA MseI, Tru1I, Tru9I 711 153 89 47
        AATT Sse9I, TasI, Tsp509I, TspEI 140 101 99 95 83 57 50 49 49 47 37 37 33 26 24 19 16 10 8 7 7 6
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 331 193 171 140 76 49 16 16 8
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 1000
        CAC HindI 186 130 122 86 69 50 46 33 30 30 27 26 26 24 22 21 21 11 10 10 8 6 2 2 2
        TTAA MseI, Tru1I, Tru9I 459 252 153 89 47
        AATT Sse9I, TasI, Tsp509I, TspEI 140 101 99 95 83 76 50 49 49 47 37 37 33 26 24 16 10 8 7 7 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 2 sequencing read(s)
  Method: SNP