WormBase Tree Display for Variation: WBVar00121348

WBVar00121348 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121348
    Other_name: cbs56869
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: gtactgtccttctctttaactttttgttgacatttttccagccctttcct tgcttctctagaaattccagttcattgtatgcttagctttaataaaacaa
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTMKAC AccI, FblI, XmiI 670 330
        CCGC AciI 813 187
        GAATTC EcoRI, FunII 1000
        GANTC HinfI 435 162 104 97 88 45 36 24 9
        TCNGA Hpy188I 624 260 116
        GTNNAC Hpy8I 522 329 149
        CAYNNNNRTG MslI, SmiMI 557 312 131
        GAWTC TfiI 532 192 162 45 36 24 9
      Polymorphic_strain_digest: GTMKAC AccI, FblI, XmiI 1000
        CCGC AciI 575 238 187
        GAATTC EcoRI, FunII 704 296
        GANTC HinfI 62 104 97 88 45 36 9
        TCNGA Hpy188I 327 297 260 116
        GTNNAC Hpy8I 522 478
        CAYNNNNRTG MslI, SmiMI 869 131
        GAWTC TfiI 556 192 162 45 36 9
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP