WormBase Tree Display for Variation: WBVar00121340

WBVar00121340 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121340
    Other_name: cbs56861
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: ttgaaatttcgctatcatttaatcactgataacttttaggacactgcgct ctattatgataaaaaagctcaagcgttcaaatcggtcatcaaacataatg
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 457 274 110 85 43 15 9 7
        GTAC AfaI, Csp6I, RsaI 904 96
        AGCT AluI 518 482
        CTNAG BstDEI, DdeI 865 110 25
        CAC HindI 144 129 124 121 99 89 61 37 36 34 26 22 18 17 13 12 9 4 3 2
        TTAA MseI, Tru1I, Tru9I 316 310 204 161 9
        CAYNNNNRTG MslI, SmiMI 451 293 192 64
        CTYRAG SmlI 523 477
        AATT Sse9I, TasI, Tsp509I, TspEI 223 207 102 89 85 83 78 43 32 27 15 9 7
        AATATT SspI 595 405
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 500 274 110 85 15 9 7
        GTAC AfaI, Csp6I, RsaI 904 66 30
        AGCT AluI 1000
        CTNAG BstDEI, DdeI 478 387 110 25
        CAC HindI 144 129 124 121 99 89 79 37 36 34 26 22 17 13 12 9 4 3 2
        TTAA MseI, Tru1I, Tru9I 477 310 204 9
        CAYNNNNRTG MslI, SmiMI 451 357 192
        CTYRAG SmlI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 266 207 102 89 85 83 78 32 27 9 9 7 6
        AATATT SspI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP