WormBase Tree Display for Variation: WBVar00121323
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| WBVar00121323 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00121323 | ||||
| Other_name | cbs56844 | |||||
| HGVSg | chrX:g.9622512T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | aattggaccaacaaaactctcttggaaaatgctggatctgaccatttgca | ccttataacactccctcttgtacaggatcttcagaagacatttcaaatca | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 524 476 | ||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 587 340 73 | ||||
| RGCY | CviJI, CviTI | 216 177 160 153 116 99 47 32 | ||||
| CAC | HindI | 232 188 103 91 73 65 61 56 38 34 17 13 13 11 3 2 | ||||
| WGTACW | TatI | 524 476 | ||||
| Polymorphic_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 1000 | |||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 531 469 | ||||
| CTNAG | BstDEI, DdeI | 587 413 | ||||
| RGCY | CviJI, CviTI | 337 216 153 116 99 47 32 | ||||
| CAC | HindI | 232 188 103 91 65 62 61 56 38 34 17 13 13 11 11 3 2 | ||||
| WGTACW | TatI | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034940 | ||||
| Transcript | CBG14447.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG14447.1:c.861A>C | |||||
| HGVSp | CBP09652.1:p.Gln287His | |||||
| cDNA_position | 866 | |||||
| CDS_position | 861 | |||||
| Protein_position | 287 | |||||
| Exon_number | 4/4 | |||||
| Codon_change | caA/caC | |||||
| Amino_acid_change | Q/H | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
