WormBase Tree Display for Variation: WBVar00121256
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WBVar00121256 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00121256 | ||||
Other_name | cbs56777 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | tatcggaactttctctaaacatccttttgtgtgcataagaaggaaatgac | gagttggcctattttaggaaacaccagctcaacaatttccatgctataag | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | G | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GACNNNGTC | AspI, PflFI, PsyI, TelI, Tth111I | 579 421 | ||
CAC | HindI | 104 98 71 69 66 65 62 44 43 41 36 36 35 33 26 23 21 21 16 14 13 12 11 8 8 7 6 4 3 2 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 283 166 160 127 92 56 49 31 22 14 | ||||
Polymorphic_strain_digest | GACNNNGTC | AspI, PflFI, PsyI, TelI, Tth111I | 579 358 63 | |||
CAC | HindI | 104 98 98 71 69 66 62 44 43 41 36 36 35 26 23 21 21 16 14 13 12 11 8 8 7 6 4 3 2 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 339 166 160 127 92 49 31 22 14 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |