WormBase Tree Display for Variation: WBVar00121143

WBVar00121143 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121143
    Other_name: cbs56664
    HGVSg: chrX:g.8653453A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: acttttgggaaaagaaaaagacgcggaaggatttctctttttttagctag gttccagtttattcaaaactcctcttgatcccaagggggtgatcgaaaca
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CTAG BfaI, MaeI, XspI 347 272 229 152
        CCNNGG BsaJI, BseDI, BssECI, SecI 536 464
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 322 303 250 125
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 536 464
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 1000
        CAC HindI 204 101 79 63 61 58 56 55 51 50 40 36 27 27 13 11 10 9 8 8 7 7 5 2 2 2 2 2 2 2
        CTYRAG SmlI 1000
      Polymorphic_strain_digest: CTAG BfaI, MaeI, XspI 381 347 272
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 322 250 175 128 125
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 531 469
        CAC HindI 204 101 91 79 63 61 58 56 55 50 36 27 27 13 11 10 9 8 8 7 7 5 2 2 2 2 2 2 2
        CTYRAG SmlI 535 465
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034796
    Transcript (14)
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP