WormBase Tree Display for Variation: WBVar00121141

WBVar00121141 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121141
    Other_name: cbs56662
    HGVSg: chrX:g.8653422G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tttctctttttttagctagtgttccagtttattcaaaactcctcttgatc caagggggtgatcgaaacaaaaatgccgttcagcttctacgagtctccat
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CTAG BfaI, MaeI, XspI 316 303 229 152
        CCNNGG BsaJI, BseDI, BssECI, SecI 505 495
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 353 303 219 125
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 505 495
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 1000
        CAC HindI 204 101 79 63 61 58 56 51 50 40 36 27 27 27 24 14 13 11 9 8 8 7 7 5 2 2 2 2 2 2 2
        CTYRAG SmlI 1000
      Polymorphic_strain_digest: CTAG BfaI, MaeI, XspI 381 316 303
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 353 219 175 128 125
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 500 500
        CAC HindI 204 101 91 79 63 61 58 56 50 36 27 27 27 24 14 13 11 9 8 8 7 7 5 2 2 2 2 2 2 2
        CTYRAG SmlI 504 496
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034796
    Transcript (14)
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP