WormBase Tree Display for Variation: WBVar00121051

WBVar00121051 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121051
    Other_name: cbs56572
    HGVSg: chrX:g.8407124G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: attacacaaaaaaaattatgtttggctctgtttttgtgggagatagagaa tacattgccatctgattatgtggtttacagaatactatgggataagcttt
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTMKAC AccI, FblI, XmiI 752 248
        RAATTY AcsI, ApoI, XapI 428 362 103 91 16
        GTTAAC BstHPI, HpaI, KspAI 980 20
        TCGA EsaBC3I, TaqI, TthHB8I 429 278 152 141
        GTYRAC HincII, HindII 980 20
        CAC HindI 199 152 104 74 50 40 40 38 37 35 34 32 30 29 27 25 16 12 12 10 2 2
        TTAA MseI, Tru1I, Tru9I 560 227 107 84 21 1
        AATT Sse9I, TasI, Tsp509I, TspEI 230 165 162 129 103 69 67 23 18 12 11 6 5
      Polymorphic_strain_digest: GTMKAC AccI, FblI, XmiI 1000
        RAATTY AcsI, ApoI, XapI 428 303 103 91 59 16
        GTTAAC BstHPI, HpaI, KspAI 506 474 20
        TCGA EsaBC3I, TaqI, TthHB8I 429 278 146 141 6
        GTYRAC HincII, HindII 506 474 20
        CAC HindI 199 152 104 74 56 50 40 38 37 35 34 32 30 29 27 25 12 12 10 2 2
        TTAA MseI, Tru1I, Tru9I 506 227 107 84 54 21 1
        AATT Sse9I, TasI, Tsp509I, TspEI 230 162 129 129 103 69 67 59 18 12 11 6 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034763
    Transcript: CBG14186.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14186.1:c.400-125G>T
        Intron_number: 5/13
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP