WormBase Tree Display for Variation: WBVar00121036
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| WBVar00121036 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00121036 | ||||
| Other_name | cbs56557 | |||||
| HGVSg | chrX:g.8259301T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gagtgacgaggatgagccgctcaacttctcgacatcaaaagatccaggta | ccacaacatcacatcactctctatttttgattcttcctcctatttccggc | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GGTACC | Acc65I, Asp718I, KpnI | 1000 | ||
| GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 1000 | ||||
| GTAC | AfaI, Csp6I, RsaI | 872 128 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 688 312 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 463 239 172 126 | ||||
| GGTNACC | BstEII, BstPI, Eco91I, EcoO65I, PspEI | 502 498 | ||||
| GTNAC | MaeIII | 441 374 124 45 16 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 545 107 85 83 79 53 30 18 | ||||
| Polymorphic_strain_digest | GGTACC | Acc65I, Asp718I, KpnI | 501 499 | |||
| GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 501 499 | ||||
| GTAC | AfaI, Csp6I, RsaI | 499 373 128 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 499 312 189 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 418 239 172 126 45 | ||||
| GGTNACC | BstEII, BstPI, Eco91I, EcoO65I, PspEI | 1000 | ||||
| GTNAC | MaeIII | 441 374 169 16 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 545 164 107 83 53 30 18 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034745 | ||||
| Transcript | CBG14155.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG14155.1:c.49+4A>C | |||||
| Intron_number | 2/9 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
