WormBase Tree Display for Variation: WBVar00118141
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| WBVar00118141 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00118141 | |||
| Other_name | cbs53662 | ||||
| HGVSg | chrI:g.7470746C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2852 | |
| Flanking_sequences | agctgggaagcttccgaaaggattagtagcatcaattggagcagaagcgg | ggctggagctgcagatgcctggaacatatcaagaagatccggttgagtcg | |||
| Mapping_target | cb25.fpc2852 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (25) | ||||
| Polymorphic_strain_digest (25) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00033023 | |||
| Transcript | CBG12008.1 | VEP_consequence | missense_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | CBG12008.1:c.1180G>A | ||||
| HGVSp | CBP38530.1:p.Ala394Thr | ||||
| cDNA_position | 1180 | ||||
| CDS_position | 1180 | ||||
| Protein_position | 394 | ||||
| Exon_number | 5/10 | ||||
| Codon_change | Gcc/Acc | ||||
| Amino_acid_change | A/T | ||||
| Reference | WBPaper00030778 | ||||
| Remark | Predicted by: ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
