WormBase Tree Display for Variation: WBVar00115826
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| WBVar00115826 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00115826 | ||||
| Other_name | cbs51347 | |||||
| cb51347 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | ||||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2310c | ||
| Flanking_sequences | tcattgacagtgaactgctgagagacttaaacgagtcggatccttgtcaaacgactcgtagtctttcagaaccgttttcttgtactaatggtaccattgaaaaccatttg | acaaattggaaagtcgaacagttgcggaagttttttcctacaaccactcc | ||||
| Mapping_target | cb25.fpc2310c | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 1000 | ||
| GTAC | AfaI, Csp6I, RsaI | 359 228 160 154 90 9 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 573 427 | ||||
| TGCA | CviRI, HpyCH4V | 499 335 166 | ||||
| CAC | HindI | 310 105 100 75 72 66 58 53 51 45 27 13 10 7 4 2 2 | ||||
| GTNNAC | Hpy8I | 599 368 33 | ||||
| TTATAA | PsiI | 661 339 | ||||
| WGTACW | TatI | 530 470 | ||||
| Polymorphic_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 502 498 | |||
| GTAC | AfaI, Csp6I, RsaI | 359 228 154 141 90 19 9 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 667 333 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 573 400 27 | ||||
| TGCA | CviRI, HpyCH4V | 834 166 | ||||
| CAC | HindI | 310 145 105 75 72 66 58 53 51 27 13 10 7 4 2 2 | ||||
| GTNNAC | Hpy8I | 632 368 | ||||
| TTATAA | PsiI | 1000 | ||||
| WGTACW | TatI | 502 470 28 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031846 | ||||
| Transcript | CBG10462.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| Intron_number | 5/8 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
