WormBase Tree Display for Variation: WBVar00113878

WBVar00113878 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113878
    Other_name: cbs49399
    HGVSg: chrV:g.7876292T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: caaaacaaaggagaagttgggcggtcccactcgttatctgtgagcaattg tctgccactgaactcttttaggcatcaactgtcgcacacacaacaatgta
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 502 225 139 134
        GCNNGC BstC8I, Cac8I 1000
        CTNAG BstDEI, DdeI 442 228 202 128
        CAC HindI 173 88 87 87 67 51 45 36 34 33 29 29 28 26 24 23 18 18 17 16 15 13 12 11 11 5 2 2
        TCNGA Hpy188I 260 232 192 179 110 27
      Polymorphic_strain_digest: GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 641 225 134
        GCNNGC BstC8I, Cac8I 509 491
        CTNAG BstDEI, DdeI 442 228 128 118 84
        CAC HindI 173 88 87 87 67 51 45 36 34 30 29 29 29 28 26 24 23 18 18 17 15 12 11 11 5 3 2 2
        TCNGA Hpy188I 260 232 179 120 110 72 27
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030409
    Transcript: CBG08654.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08654.1:c.244+75T>C
        Intron_number: 3/4
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP